FastQCFastQC Report
Wed 31 May 2023
EGAF00007949063

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949063
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507083
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30740.6062123952094627No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13440.26504536732645345No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13020.2567626995975018No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12980.2559738740995064No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12780.2520297466095294No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11790.23250631553414333No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT11550.22777336254617095No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC10860.21416612270575033No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10150.20016447011633204No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9690.19109297688938495No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7310.14415785975865883No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6690.13193106453973016No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA6440.12700090517725895No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6320.12463442868327276No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6150.12128192031679232No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6110.12049309481879693No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5930.11694338007781763No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5850.11536572908182684No Hit
GGCCGCCCTTCCCTGAAACTGCAGGCTGCCC5320.10491379123338783No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5080.10018083824541543No Hit

[OK]Adapter Content

Adapter graph