FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949064

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949064
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479867
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12600.2625727545340688No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12080.2517364186326628No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10460.21797706447828252No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9490.19776313020065978No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT8970.18692679429925377No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7920.16504573142141468No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7900.1646289492713606No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7400.15420939552000865No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG7110.14816605434422456No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6880.14337305961860267No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6860.14295627746854858No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6740.1404555845682241No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT6680.13920523811806187No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6550.13649615414271038No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA6040.1258682093163314No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5940.123784298566061No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5870.12232556104087174No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5710.11899130384043911No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5610.11690739309016875No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5490.11440670018984427No Hit
GTTGGCGGTGCCGGTAATGGTCGGTACGGAGTTACGGAAGCCGG5380.11211439836454684No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4940.10294519106335714No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG4830.10065288923805972No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)