FastQCFastQC Report
Sun 21 May 2023
EGAF00007949065

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949065
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479867
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30460.6347592145323601No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25090.5228532072428402No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12130.25277837400779796No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10370.2161015448030392No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9670.20151416955114645No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC8910.1856764478490915No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8430.17567367624779365No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8400.17504850302271255No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8140.16963033507200956No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7510.1565016973453061No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7310.15233387584476532No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7250.15108352939460307No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG7090.14774927219417047No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7090.14774927219417047No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG6660.1387884559680078No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6640.1383716738179537No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6570.13691293629276444No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6270.1306612040419533No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6260.13045281296692623No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5950.12399268964108806No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5880.12253395211589876No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5680.118366130615358No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5390.11232278943957387No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5200.10836335901406013No Hit
AACTCTGGTTTTGATAACAACGCTCGCGACG5170.10773818578897904No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5130.10690462148887088No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5030.10482071073860048No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)