FastQCFastQC Report
Wed 31 May 2023
EGAF00007949066

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949066
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428647
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14540.33920685319155386No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11520.26875260995644434No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10830.25265544842259485No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9910.2311925663774621No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9760.2276931834353209No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9370.21859478778575378No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9200.2146288204513271No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8660.20203104185961876No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8560.19969811989819125No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7420.17310280953791815No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7390.1724029329494899No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6610.15420614165035568No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5630.13134350642836648No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5090.11874572783665814No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5040.11757926685594441No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5020.1171126824636589No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5010.11687939026751616No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4740.110580500971662No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT4290.10008235214523839No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)