FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949067

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949067
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences428647
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59151.3799233401843474No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22700.5295732852440352No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20380.4754494957389181No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11990.27971734317515345No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10990.25638812356087876No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10280.23982437763474374No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9930.23165915076974758No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9440.22022783315875302No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9300.21696174241275457No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9190.21439552825518435No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8970.20926309994004388No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7780.18150132859905702No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7590.17706877687234485No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6070.14160836305864732No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5310.12387815615179858No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5250.12247840297494209No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5210.1215452341903711No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5130.11967889662122912No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4620.10778099461794903No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4590.10708111802952079No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4530.10568136485266431No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA4390.10241527410666586No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)