FastQCFastQC Report
Wed 31 May 2023
EGAF00007949069

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949069
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432915
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62721.44878324844369No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24220.5594631740641928No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19630.45343774181998775No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11920.2753427347169768No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11820.2730328124458612No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10260.2369980250164582No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10160.2346881027453426No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9420.21759467793908738No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9320.21528475566797178No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9040.20881697330884813No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8980.2074310199461788No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7960.18386981278079995No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7540.1741681392421145No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6010.13882632849404616No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5320.1228878648233487No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5270.1217329036877909No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5270.1217329036877909No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5050.11665107469133663No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4820.11133825346777082No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4620.10671840892553966No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA4490.1037155099730894No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4420.1020985643833085No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4400.1016365799290854No Hit

[OK]Adapter Content

Adapter graph