FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949072

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949072
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444543
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT23180.521434371928025No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC20540.4620475409577926No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16970.381740349077592No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15150.3407994277269016No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13820.31088106212447386No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG13710.3084066108340475No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12580.2829872475778496No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12530.2818624969912922No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11710.26341658737175033No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11100.24969463021574964No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9820.22090101519987942No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9290.20897865898237064No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8980.2020052053457146No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8980.2020052053457146No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8410.18918304865895988No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8370.18828324818971393No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7950.1788353432626315No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG7720.17366149056446734No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6450.1450928256659086No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6400.14396807507935117No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6270.14104372355430184No Hit
TACGGAAGCAGATGCGCTCGGCTGACGGGCGGAAGACGCAGAAG6160.13856927226387547No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6060.13631977109076063No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6000.1349700703868917No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5840.13137086850990792No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA5710.1284465169848586No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5680.12777166663292414No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5470.12304771416938294No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT5440.12237286381744847No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5400.12147306334820253No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5250.11809881158853025No Hit
CAGACGGTCGGTTGGATCCGGATACGCGCCGCGCAGCGGTGCTT5140.1156243602981039No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5140.1156243602981039No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5090.11449960971154646No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4850.1091008068960708No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT4830.10865090666144783No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA4810.10820100642682486No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC4730.10640140548833298No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT4630.10415190431521809No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4500.10122755279016879No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)