FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949075

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949075
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448629
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62351.3897897817573095No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30850.6876505977099118No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30210.6733849127006948No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15710.3501779867106228No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14090.3140679715310424No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11760.26213196204436184No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8950.19949668880076854No Hit
GAACTGCTGATGAAGGACCCGAACTACCAGC5840.13017437570910484No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5300.11813770398257804No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5220.11635449335642592No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)