FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949077

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949077
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences491079
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA19040.38771765846228406No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13750.2799956829756516No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12930.26329775860910365No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12270.24985796582627234No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9050.18428806770397432No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7970.16229567951388676No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7630.15537214989848885No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6800.1384705923079586No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6060.12340173373326897No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5450.11098010707034918No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5250.10690744259070334No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)