FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007949078

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949078
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483311
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT19040.3939492376544296No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16830.3482229868552547No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11940.2470458979828723No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10260.21228567113101088No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9260.1915950599096648No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9230.1909743415730244No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8930.18476715820662057No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8250.17069754257610523No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8170.16904229367839754No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7840.16221439197535334No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7690.15911080029215144No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7650.1582831758432976No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7640.15807626973108413No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG7590.15704173917001682No Hit
GTTCAGACCGAACTCTTCTGCAAATTTCTTGGCACCTTCCTGCA7430.15373124137460145No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5880.12166079398151501No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5560.11503979839068426No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5280.10924642724870735No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5260.10883261502428042No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT5210.10779808446321312No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT4950.10241852554566315No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)