FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007949079

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949079
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483311
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA39620.8197620165897321No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18090.3742931569941508No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15900.3289807184194028No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12050.2493218652172204No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11270.23318318846457042No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9930.20545776942796667No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9750.20173345940812437No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9740.2015265532959109No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9470.19594008826614748No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8670.1793875992890706No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8520.17628400760586868No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8430.17442185259594753No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8270.17111135480053216No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8030.1661456081074091No Hit
CTGCGTTTCAAAACCGGCCGTAACGCTGCGT8020.16593870199519564No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7810.16159367363871296No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7180.14855858856926493No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5440.11255692504412274No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5370.1111085822586285No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5330.11028095780977465No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5190.1073842722387862No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5130.10614283556550544No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4990.10324614999451698No Hit

[OK]Adapter Content

Adapter graph