FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007949080

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949080
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462891
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT17910.3869161422451506No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15090.3259946726119108No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11980.25880822915113927No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9720.20998464001244352No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8960.19356608791270516No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8560.18492474470231654No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8100.1749872000103696No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7960.17196272988673358No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7870.17001842766439618No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7570.16353742025660467No Hit
GTTCAGACCGAACTCTTCTGCAAATTTCTTGGCACCTTCCTGCA7540.16288931951582555No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7480.16159311803426724No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG7240.15640831210803408No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7190.15532814420673552No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6550.14150199507011368No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5450.117738301241545No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5070.10952902519167579No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4990.10780075654959807No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4920.10628852148778006No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)