FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949081

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949081
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462891
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42710.9226794212892452No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA36170.7813934597993912No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17560.3793549669360605No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15740.34003685532879235No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10460.2259711249516625No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9530.20588000198750894No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9240.1996150281599772No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8750.18902938272725112No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8650.18686904692465398No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8460.18276440889971937No Hit
CTGCGTTTCAAAACCGGCCGTAACGCTGCGT8060.17412306568933075No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7890.1704504948249156No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7860.16980239408413644No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7380.1594327822316701No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6910.14927920395946345No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6740.1456066330950483No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6650.14366233087271085No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5480.11838640198232413No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5200.11233746173505209No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4920.10628852148778006No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4880.1054243871667412No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC4870.10520835358648148No Hit

[OK]Adapter Content

Adapter graph