FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949083

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949083
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529429
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51040.9640575034612763No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16200.3059900383243079No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15890.30013467339341066No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10320.1949269873769665No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9730.1837829057342911No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9690.18302737477546566No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7620.14392864765624852No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6810.12862914574003315No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6740.1273069665620886No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6110.11540735396058774No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6090.115029588481175No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5420.10237444492084868No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)