FastQCFastQC Report
Sun 21 May 2023
EGAF00007949085

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949085
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536200
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG53610.9998135024244684No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15950.29746363297277134No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15860.29578515479298767No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10620.1980604252144722No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9820.18314061917195076No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9460.1764267064528161No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7110.13259977620290936No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6930.12924281984334202No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6820.12719134651249533No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6700.12495337560611713No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6550.12215591197314433No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5510.10276016411786645No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)