FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007949087

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949087
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504269
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19310.38293053905752683No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17160.3402945650039959No Hit
GTGGGTCTGATCCCGCGTAACGGCGTTGACC15850.31431636685975145No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12830.2544276963287452No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10920.21655108682072463No Hit
ATGTCCAACATGGACATCGATGGTATTAACA8700.17252696477475316No Hit
GGTGAACAGTGCTTCAGCGGTGGCATTGACG8590.17034558935806088No Hit
GATGGTAGCCCAGTAGTGGGCACCACTGACA7950.15765395057003306No Hit
GCAGCGTGCCGTGCACTGGGCGAAGCAGGTG7880.1562658025775925No Hit
AACGCATTCCGTCTGAAGAGCCTGGCTAAAT6960.13802157181980254No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6480.12850284272878165No Hit
ACCGCAGCTGACGCGGCGGAACAGGATGGCA6440.12770961530452993No Hit
GGTCTGAAAACCTACGCGTGCGAGGTGACTG6430.127511308448467No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA6140.1217604096226419No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6050.11997564791807547No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5920.11739765878925731No Hit
CCGCTGGTAACTGATCTGCCGCACTATGTCG5860.11620781765287971No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5530.10966369140280287No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)