FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949090

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949090
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495287
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8180.1651567676922673No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7690.15526351388185033No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7300.14738929146131435No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6460.1304294277863138No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5980.1207380771148849No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5550.11205624213839653No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5510.11124862958244411No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5320.10741246994167017No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5140.10377821343988435No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5130.10357631030089626No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)