FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949091

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949091
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495287
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10950.2210839371919715No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8900.17969379369941063No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8880.17928998742143445No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8400.16959863675000555No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7680.1550616107428622No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6660.13446749056607582No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6130.12376662419970644No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5910.11932475514196819No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5910.11932475514196819No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5820.11750762689107527No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5260.10620105110774158No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5220.10539343855178916No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5210.10519153541280106No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4970.10034586007708662No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)