FastQCFastQC Report
Sun 21 May 2023
EGAF00007949093

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949093
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461762
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT58201.2603895513273071No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45570.9868720249825668No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA40050.8673299232071934No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17470.3783334271767707No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16680.3612250466690633No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA12170.2635556845301259No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA11970.2592244489585544No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT10710.23193766485765394No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10300.2230586319359324No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9950.21547896968568225No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT9380.20313494830670348No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8690.18819218558478176No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8660.18754250024904606No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8580.18581000602041745No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG8470.18342782645605313No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC8150.17649784954153871No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7170.15527479524083834No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6810.14747857121200966No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT6800.14726200943343107No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT6760.14639576231911677No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6670.1444467063119096No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5540.11997522533253062No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5480.11867585466105916No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5370.11629367509669485No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5290.11456118086806623No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5100.1104465070750733No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5060.109580259960759No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5030.10893057462502329No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC4960.10741464217497326No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4910.10633183328208039No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4790.10373309193913748No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)