FastQCFastQC Report
Wed 31 May 2023
EGAF00007949095

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949095
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488122
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT64141.3140157583554932No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA41560.851426487640385No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19660.4027681604189116No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17640.361385063570173No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA12730.26079545687348654No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA12290.2517813169658405No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11730.2403087752652001No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT11600.23764550665612288No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11510.23580170531137706No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11170.22883623356455968No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT10150.20793981832410752No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9540.19544294254305278No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9260.18970667169273256No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG9250.1895018048766497No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC9020.1847898681067438No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8890.18212659949766655No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7850.16082045062504866No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT7700.15774744838380567No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7580.15528904659081133No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT6980.14299703762583946No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6570.13459749816644198No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6360.13029529502870182No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6280.12865636050003892No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5680.11636435153506705No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5630.11534001745465274No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5520.11308648247774122No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5510.11288161566165836No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5490.11247188202949263No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5320.10898914615608392No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5190.10632587754700669No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)