FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949099

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949099
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506941
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC29860.5890231802122929No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18290.3607914925010997No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17950.3540845976158961No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17250.34027628461694753No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13270.26176616213721127No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12220.24105369263878834No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11830.23336048968223125No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11030.2175795605405757No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9930.19588078297079936No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9470.18680674871434744No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8970.1769436680008127No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8580.16925046504425564No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8470.167080587287278No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8320.1641216630732176No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7920.1562311985023898No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7570.14932704200291552No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7320.14439550164614817No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7240.14281740873198262No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7240.14281740873198262No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7120.1404502693607343No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7040.1388721764465687No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG7020.13847765321802735No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6960.1372940835324032No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6700.13216528156136512No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6240.1230912473049132No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5900.1163843524197096No Hit
TTCCTGGAAGGCGAAGCAAGCCCGCCGCTGG5900.1163843524197096No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5750.11342542820564917No Hit
GTCGCGGGTAAACGTGAAGGTCTGGGCGGTC5690.11224185852002501No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5630.11105828883440086No Hit
AAAATTTCCGGCAGCCAGGCATCCTCCCACA5390.10632401009190418No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5320.10494317879200933No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5190.10237877780649031No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)