FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949101

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949101
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486858
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47360.9727682404315016No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15700.3224759580822334No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15030.30871424522139923No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13260.27235867542486725No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC13070.26845610013597393No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10060.2066310916119279No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10030.2060148955136816No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9780.20087992802829574No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9760.20046913062946484No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT9370.19245858135226288No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8860.18198324768207566No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8410.1727403062083811No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC7980.1639081621335174No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG7280.1495302531744369No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7240.14870865837677516No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7020.14418988698963559No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6680.13720633120951078No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6660.1367955338106799No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6590.13535774291477184No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6460.1326875598223712No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6460.1326875598223712No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6350.1304281741288014No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6270.12878498453347795No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6180.126936396238739No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6120.1257040040422464No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6010.12344461834867661No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5890.12097983395569138No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5880.12077443525627596No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5780.11872044826212161No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5560.11420167687498203No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5510.11317468337790484No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5500.11296928467848942No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5480.11255848727965855No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5320.10927210808901158No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5290.10865591199076528No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC5150.10578033019894917No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5110.10495873540128745No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5030.10331554580596394No Hit
CACCAGCCGATGCGTGAACGTGCACAGTCTA4960.1018777549100559No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)