FastQCFastQC Report
Wed 31 May 2023
EGAF00007949103

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949103
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481424
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT53321.1075476087606766No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47070.9777244175612351No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16840.3497956063677756No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14370.2984894812057563No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12200.2534148692213101No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11810.24531390209046494No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10850.2253730599222307No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10720.22267273754528233No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10120.2102097111901359No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9310.1933846256106883No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8680.18029844793778457No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8670.18009073083186547No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7230.15017946757951411No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6750.14020904649539698No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5840.12130678985675829No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5550.1152829937851042No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4990.10365083585363422No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4960.10302768453587689No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)