FastQCFastQC Report
Wed 31 May 2023
EGAF00007949105

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949105
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513771
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36740.7151045893987789No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA29950.5829445414396686No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG26970.5249420461645363No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26590.5175457548207275No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15860.30869784398107325No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14870.28942855863799244No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13450.26178978572165423No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12850.2501114309682719No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12670.24660792454225716No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12100.2355134875265439No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11930.23220462034641895No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10550.20534440441363952No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9820.19113573946369103No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9690.18860542926712484No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9440.18373944811988221No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9230.17965202395619836No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8440.16427552353091163No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8380.1631076880555734No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8270.16096665635078664No Hit
GACCTGTTCATCAAACGTCTGGATCGCTGCC8250.16057737785900722No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7080.13780458608991167No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6940.1350796366474558No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6710.13060293399199252No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5910.11503179432081607No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5880.11444787658314697No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)