FastQCFastQC Report
Sun 21 May 2023
EGAF00007949106

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949106
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514970
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT27010.5244965726158806No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19550.3796337650736936No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT16910.32836864283356315No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15270.29652212750257295No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14210.2759384041788842No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13990.2716663106588733No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13270.2576849136842923No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11930.23166398042604422No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11860.2303046779424044No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10920.21205118744781248No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10570.2052546750296134No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10070.19554537157504323No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT9450.18350583529137618No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT8950.17379653183680605No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8720.16933025224770376No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8470.16447560052041868No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7870.15282443637493448No Hit
TGCCGGAGCCGCTACTGGGGCCGGCTGCGGAACACCGATATCTG7580.14719304037128378No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG7180.13942559760762763No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7030.13651280657125658No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6930.13457094588034255No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5860.11379303648756238No Hit
AACGTGAGGACGCGGAGTGGACGGGGTCTGCGGCAGCTGACGAC5630.1093267568984601No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5570.10816164048391168No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5570.10816164048391168No Hit
GTCAGACTGCAGCATGGAGTCGTATACCGCATGAACCAGTTGGA5520.10719071013845466No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5400.10486047730935781No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)