FastQCFastQC Report
Wed 31 May 2023
EGAF00007949109

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949109
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493956
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47320.9579800630015629No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG25340.5130011579978783No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24730.5006518799245278No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20550.41602895804484613No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA15920.3222959129962993No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14940.3024560892063261No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14600.2955728850342946No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13850.2803893464195191No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13380.2708743288875932No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12170.24637821992242226No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12020.24334151219946717No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10710.21682093141899278No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10230.20710346670553653No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG9320.18868077318627569No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9050.18321469928495657No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8670.17552170638680367No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG8610.17430702329762165No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7920.16033816777202828No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7920.16033816777202828No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7840.15871859031978558No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG7680.15547943541530013No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7630.15446719950764845No Hit
AACCAGCAGACCAACCAGGCTGGTGGCGAAG7070.14313015734194948No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6670.13503227008073593No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6610.13381758699155388No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5950.12045607301055154No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5930.12005117864749086No Hit
GCAGCTCGTGAAGAAGAAGAACCGCACGAAC5890.11924138992136951No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5820.11782425965065715No Hit
CGTTGGAGCCGTTCTCCGTCTGAAGGTCGCG5240.1060823231218975No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5060.1024382738543514No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA4940.10000890767598734No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)