FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949112

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949112
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454829
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT19600.43093118512671796No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16290.3581565819241957No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15590.3427661824553843No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG14560.3201203089512762No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12760.28054499603147554No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9240.20315327298830987No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8320.1829258908293007No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7180.15786152598009362No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6750.14840742344925237No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA6320.1389533209184111No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5140.11300950467098624No Hit
GTCTTCCGGGCCTTCCTCACCCGGGCGACGGTGCGCGCGGTGAC4980.10949169907811507No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT4790.10531430493658056No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)