FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949113

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949113
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454829
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA40640.8935226205892763No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19670.43247022507359906No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16630.36563191880904694No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15860.3487024793933544No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT14560.3201203089512762No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10450.22975667778439812No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7460.16401768576761816No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7210.15852111452875695No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6450.14181153796261892No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5690.1251019613964809No Hit
GGCGAAGCTGAACGTGGCAAAGCCGGTGATC5060.11125060187455066No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT4910.10795265913123393No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT4740.10421499068880834No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4600.10113691079504604No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4580.10069718509593716No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)