FastQCFastQC Report
Wed 8 May 2024
EGAF00007949114

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949114
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499389
Total Bases21.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT37750.7559237388088244No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC32630.6533984529094553No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA23890.47838458596404804No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA22420.4489486152077839No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA19930.3990876851512548No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT17840.3572365430556139No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16430.32900204049348303No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA16380.328000816998372No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT15960.3195905396394394No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT15880.31798858204726177No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT15880.31798858204726177No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG15390.3081765917951737No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT14950.29936582503819664No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13690.2741349929613988No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG13330.26692618379659944No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT13300.26632544969953287No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA12730.2549115018552671No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT11630.23288458496282458No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11190.22407381820584754No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10990.22006892422540345No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG10520.2106574233713598No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG10500.21025693397331538No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10440.20905546577918216No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC9610.19243515576033912No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA9150.18322389960531768No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8980.1798197397219402No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8630.17281117525616302No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7750.15518964174220898No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC7150.1431749598008767No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC7110.14237398100478785No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7090.14197349160674344No Hit
GATGCGATGCGGGGAGTCGCAGATACGACCGGTAGAGCTGGACT6530.13075978846149994No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG6520.13055954376247775No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6420.1285570967722557No Hit
GGCTGCCGGTTTAGCCGCCGGCTTGGCCGCTGCGGACTTAGCAA6360.12735562857812247No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA6130.12275000050061176No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6050.1211480429084341No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5380.10773164807394636No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC5380.10773164807394636No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5030.10072308360816917No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)