FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949121

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949121
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences399936
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40401.0101616258601376No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10760.269043046887502No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8850.22128540566490637No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6300.15752520403264522No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5980.14952392382781243No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4680.11701872299567931No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4250.10626700272043527No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4030.10076612257961275No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)