FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949123

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949123
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences407800
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11680.2864149092692496No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10110.24791564492398235No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6750.16552231486022562No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6720.1647866601275135No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6170.15129965669445805No Hit
GGTCGCTGGAACCCGCAGCCGGGCGTGTACC5230.12824914173614518No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG4480.10985777341834231No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)