FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007949128

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949128
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415547
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT9560.2300582124284377No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9400.2262078657769157No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8270.19901479255054183No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8110.19516444589901985No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7140.17182171932416793No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6760.16267714602680322No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6590.15858615270956114No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC5230.12585820617162438No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG4980.1198420395286213No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4960.11936074619718105No Hit
GCCATCAGCGCCCATGTCGGCGATCAGACGGATGTCACGTGCCT4880.11743557287142008No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4160.10010901293957121No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)