FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007949129

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949129
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415547
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42531.0234702693076836No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17970.43244205829906124No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA9860.23727761240004136No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9350.22500463244831512No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8350.20093996587630278No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7550.18168823261869296No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6930.16676813934404533No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6830.1643616726868441No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5650.13596536613186955No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5630.13548407280042932No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC5430.13067113948602685No Hit
GATGAACTGGTGCAGCCACTGGGCCTGCGTA5230.12585820617162438No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4900.11791686620286033No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4560.10973487956837615No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)