FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949131

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949131
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences380139
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37820.99489923422748No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22840.6008328532457864No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11160.2935768232146662No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10640.27989761639821226No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8590.2259699741410379No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7200.18940440207397818No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6990.18388010701348717No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6150.16178292677152306No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4750.12495429303491619No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG3950.10390935947114083No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)