FastQCFastQC Report
Sun 21 May 2023
EGAF00007949133

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949133
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449691
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25040.5568267988463189No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24810.5517121756939765No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC23280.5176888129849163No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11830.2630695299661323No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10280.22860141741773793No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10270.2283790424980709No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9620.213924672719712No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9530.21192329844270846No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9390.2088100495673696No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7400.1645574405536246No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7140.15877569264228103No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7050.1567743183652775No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6380.14187519874758445No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT5890.1309788276838985No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5560.12364045533488552No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5160.11474545854820309No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5010.1114098347531972No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4900.10896371063685954No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4620.10273721288618184No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4610.10251483796651478No Hit

[OK]Adapter Content

Adapter graph