FastQCFastQC Report
Sun 21 May 2023
EGAF00007949138

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949138
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences383285
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14040.36630705610707437No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12650.33004161394262754No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10750.2804701462358297No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC10610.27681751177322356No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10410.27159946254092904No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8940.23324680068356443No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8490.22150618991090182No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8440.2202016776028282No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7770.2027212126746416No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6670.1740219418970218No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6540.17063020989603037No Hit
AGATGGCGCGTTGGAAGTAACTTTGTTGTTGGTGTCATCGGCGG6000.15654147696883522No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5420.14140913419518114No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5090.13279935296189518No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4840.12627679142152706No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4720.12314596188215036No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGACGGC4330.11297076587917607No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG4050.10566549695396375No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG3950.1030564723378165No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)