FastQCFastQC Report
Wed 31 May 2023
EGAF00007949139

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949139
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences383285
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37430.976557913823917No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26050.6796509125063595No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22380.5838997090937553No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14200.37048149549291No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12900.33656417548299566No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11710.3055167825508434No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG10820.2822964634671328No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9840.25672802222888974No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9080.23689943514617062No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8770.2288114588361141No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6820.1779354788212427No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG6530.17036930743441564No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5300.13827830465580443No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4940.1288858160376743No Hit
GCGACTACCGATCGCCAGCAGGTACCGCCAA4690.12236325449730617No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC4620.1205369372660031No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA4170.10879632649334046No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4160.10853542403172574No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG4010.10462188710750486No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC3840.10018654526005454No Hit

[OK]Adapter Content

Adapter graph