FastQCFastQC Report
Sun 21 May 2023
EGAF00007949140

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949140
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425188
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17590.41369935181613776No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14700.34572941851604466No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12580.29586912142393484No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11940.28081695626405256No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11470.2697630224747641No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9870.23213260957505857No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8660.20367460981965624No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6980.16416267627496542No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6670.15687178377564748No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6430.15122722184069165No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6220.14628823014760528No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6020.1415844285351421No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5380.12653226337525988No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4940.11618389982784086No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4930.11594870974721772No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4330.10183730490982812No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)