FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007949141

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949141
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425188
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38050.8948982567711224No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27230.6404225895368637No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14080.3311476335174088No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12690.2984562123107896No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12090.2843448074734No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11030.25941465892734505No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9620.22625285755947955No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7160.1683960977261823No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6960.1636922961137191No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6940.1632219159524728No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6870.16157558538811068No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5350.12582669313339043No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5350.12582669313339043No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4560.1072466767641608No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)