FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949145

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949145
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430022
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT49031.1401742236443717No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39360.9153020078042519No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16100.37439944933049935No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15050.34998209393937985No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13030.3030077530917023No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11980.27859039770058275No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11280.26231216077316977No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10420.24231318397663373No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9940.23115096436926486No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8840.20557087776904437No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7430.17278185767239815No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7370.17138658022147704No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7240.16836347907781463No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6550.1523177883922218No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6460.15022487221584013No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6290.14627158610489696No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA5860.13627209770662896No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5850.13603955146480878No Hit
GAACCGATCTACGCTACCATCGACGACCTGG5330.12394714689015912No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG5130.11929622205375538No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4940.11487784345917186No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4580.10650617875364515No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4430.10301798512634237No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4360.10139016143360106No Hit

[OK]Adapter Content

Adapter graph