FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007949146

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949146
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395700
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10440.26383623957543595No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9820.24816780389183726No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7910.1998989133181703No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6310.15946424058630276No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5890.1488501389941875No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5280.133434420015163No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4870.12307303512762195No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCGGAA4860.12282031842304776No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC4830.12206216830932524No Hit
GTATTTCACGGAGCCCTGACCAGACGCAGTACCACCGCCGCGCG4510.11397523376295174No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4450.11245893353550669No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4430.11195350012635835No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4410.11144806671721001No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGATTT4370.11043719989891332No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG4330.10942633308061664No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG4270.10791003285317159No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4060.10260298205711398No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)