FastQCFastQC Report
Wed 31 May 2023
EGAF00007949147

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007949147
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395700
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39130.9888804649987364No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19130.4834470558503917No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10470.26459438968915844No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8930.22567601718473593No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8260.20874399797826637No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6570.16603487490523125No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA6270.15845337376800606No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6240.15769522365428354No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG6170.15592620672226434No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5370.13570887035633056No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4860.12282031842304776No Hit
CCAGTTACGCTGAACAGCGCCGCACCGGCTT4850.12256760171847358No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4820.12180945160475108No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4670.11801870103613848No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4600.11624968410411929No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4540.11473338387667424No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4520.1142279504675259No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4450.11245893353550669No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG4300.10866818296689411No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)