FastQCFastQC Report
Sun 21 May 2023
EGAF00007951197

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951197
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505123
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44310.8772120849773224No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21960.4347455966170616No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14460.2862669092478466No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14330.2836932786667802No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14190.28092167650255484No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13070.25874885918875207No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12180.2411293882876052No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11790.23340849654440604No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10260.20311884432108615No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9670.1914385209147079No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8770.1736210784304021No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8550.16926570360090512No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7710.15263609061555306No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7510.14867665895237397No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7190.14234156829128747No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6990.1383821366281084No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6640.13145313121754504No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6390.1265038416385712No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6360.12590992688909433No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6240.12353426789118689No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5840.11561540456482876No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5290.10472696749108633No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5170.10235130849317887No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5120.10136145057738412No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5110.10116347899422518No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)