FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951205

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951205
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481835
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46040.9555138169705397No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16090.3339317401185053No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12960.2689717434391441No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10480.21750184191683875No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC8160.16935257920242405No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6610.13718389075098322No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5820.12078823663702305No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5750.11933545715857088No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5720.11871283738209139No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4820.10003424408770638No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)