FastQCFastQC Report
Sun 21 May 2023
EGAF00007951207

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951207
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472861
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42180.8920168929135623No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28980.6128650914327889No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22160.4686366606677227No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21820.4614463869932178No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13510.2857076392428219No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12710.26878934824398715No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11630.2459496553955602No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6800.1438054734900954No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT6060.12815605431617325No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5800.12265760974155195No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5780.12223465246658108No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5430.11483290015459088No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)