FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951208

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951208
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences423864
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA32430.7651039012513448No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA29520.696449804654323No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15300.36096483777815525No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG13240.31236434327991996No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT12880.3038710529792575No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9520.2246003435064077No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC9460.22318479512296396No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8460.19959232206556818No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8320.1962893758375328No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC7570.17859502104448596No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6760.15948511786799538No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6590.15547439744823813No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6560.15476662325651624No Hit
CCAATCGCATTCTGCCAGCAGGCGGTTACGACGCTGGCGCAGGT6400.15099182756733293No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6320.14910442972274127No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5900.13919559103863505No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5680.13400524696600796No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5660.13353339750486004No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5420.12787120397108506No Hit
GACCACGCGTTCGGATGCCTGGATGTTACGTACGATATCCTCCA5370.12669158031821526No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5300.12504010720419756No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5140.12126531151501424No Hit
ACCGTGCTGGGAGAACAGGCGACCGGCGCTTTTCGGGTTTGCCT4890.1153671932506653No Hit
CGTACTCCTGGCGACAGAGAAAATGGCGGTGACGTTATTTAAAT4780.11277202121435179No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4760.11230017175320385No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4740.11182832229205594No Hit
CGGCGAAGCGACCGTTGAAAAAGGTGGATGCAACTGATTTAAAT4720.11135647283090802No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4660.10994092444746428No Hit
TGCATCTTCGAAGTCTTCATCATCGTCGTCGTCTTCTTCTTCAC4520.10663797821942889No Hit
CCCATGACGGATTCCTGTCACCGAAGGATGCGTACTCCTGGCGA4360.10286318253024554No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)