FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007951209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences423864
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT73151.7257894041485007No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36500.8611252665949455No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15180.35813374101126777No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG13680.32274503142517413No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC12540.295849612139743No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA11040.2604609025536493No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC10350.24418209614404618No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10070.2375762036879754No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT9870.23285770907649625No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA9740.22979068757903479No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9050.21351188116943168No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG8170.19275050487892342No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7450.17576392427759846No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7080.16703470924636205No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7040.1660910103240662No Hit
ATGGCCCGTCACCACAACATTAACGGTAACA6770.15972104259856934No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6300.14863258026159334No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT5840.13778004265519128No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5750.1356567200800257No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5740.1354207953494517No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5730.13518487061887774No Hit
AGCGATGACAAACTGGAACGTAACTGCTACT5690.13424117169658192No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5210.12291678462903195No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5180.12220901043731008No Hit
CTGGGCTGGAAAGCTGGTATCCTGACCGGTT5110.12055753732329237No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4760.11230017175320385No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4720.11135647283090802No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4670.11017684917803824No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)