FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951211

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951211
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498720
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46710.9365976900866219No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34790.697585819698428No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14950.2997674045556625No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG14580.29234841193455247No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9960.19971126082771895No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA9840.19730510105871027No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT9160.18367019570099455No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6680.13394289380814886No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA6650.13334135386589668No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6170.12371671478986204No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5930.11890439525184472No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5750.11529515559833173No Hit
AACGTCGATCGTCAGGTACCGGACAGCGCAG5310.10647256977863329No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5210.10446743663779276No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5070.10166025024061598No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)