FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007951213

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951213
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400968
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19560.4878194768659843No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6800.16958959318449351No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5830.14539813650964664No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5570.13891382853494544No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5160.12868857365176273No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC4770.11896211168971091No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)