FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007951219

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007951219
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences389015
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51911.3343958459185379No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13390.3442026657069779No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11030.2835366245517525No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6280.1614333637520404No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5990.15397863835584746No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5980.15372157885942703No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG5940.15269334087374523No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5380.13829800907420023No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4440.11413441641067824No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4390.11284911892857602No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4240.1089932264822693No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)